PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g003900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 355aa    MW: 40308.2 Da    PI: 6.4426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g003900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059173195123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++Fs+   L  H  +H
  Sopen11g003900.1 173 YECKTCNRTFSSFQALGGHRASH 195
                       99**********99999998887 PP

2zf-C2H213.90.00016257279123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F++   L  H+r+H
  Sopen11g003900.1 257 HECSYCGAEFTSGQALGGHMRRH 279
                       78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.22E-7172195No hitNo description
PfamPF139121.4E-12172197IPR007087Zinc finger, C2H2
SMARTSM003550.063173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-7252279No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4255281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0098257279IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-12257281IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533257284IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEALEEVVVC PSKDLFHIVK GKRTKRLRLQ SPNIPFSLTS SHDSLNACDI AIENSNNNNN  60
IDNYNRDDAA CNDEAIACNN NNNNNNNEAL SSVASSEVFI NTFTEEEEET AKCLVLLSKG  120
RDDHPPPPRR FIDNNVDFFN EDIRLYPTKF NSKRYIETST NSIDGTKAGI YVYECKTCNR  180
TFSSFQALGG HRASHKKPKI FNTEYNKRSY FDFSDEDDYH LQHSPSTLYN KNKNTSINKN  240
LPNSSNNKYT SSSPRIHECS YCGAEFTSGQ ALGGHMRRHR GGANVNSPYH MSNLSPATSI  300
DQEFGNNNIN TMKKQRDHEL SLDLNNIPIQ DDHPVVSLKQ QDQEQTQRQL VDCNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056541.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM1D2E80.0M1D2E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000797730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-38C2H2 family protein